How-To guides#
These guides answer one practical question at a time. For a guided introduction, start with Getting started. For complete scientific examples, use the tutorials.
Installation and environments
Verify an installation, add readers, and prepare offline model access.
Slides and storage
Open, inspect, save, reopen, and organize WSI analyses.
Tissue and tiles
Tune tissue detection, tile resolution, overlap, and background coverage.
Models and features
Choose models, control compute, understand output keys, and aggregate features.
Visualization
Inspect tissue, tiles, cells, annotations, and feature values.
Annotations
Import, align, join, and export annotation geometries.
Segmentation
Run tissue, cell, semantic, and artifact segmentation.
Multiple slides and scaling
Design repeatable batch workflows and slide-level aggregation.
Troubleshooting
Diagnose metadata, memory, model access, key, and alignment errors.