Models#
List all available models. |
Vision Models#
🤗Hugging Face GitHub Paper [Chen et al., 2024] General-purpose self-supervised model for pathology |
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🤗Hugging Face GitHub Paper [Chen et al., 2024] An improved version of UNI |
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🤗Hugging Face GitHub Paper [Xu et al., 2024] A whole-slide foundation model for digital pathology |
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🤗Hugging Face GitHub Paper [Huang et al., 2023] Pathology Language-Image Pretraining (PLIP) |
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🤗Hugging Face GitHub Paper [Lu et al., 2024] CONtrastive learning from Captions for Histopathology (CONCH) |
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🤗Hugging Face Paper [Vorontsov et al., 2024] A foundation model for clinical-grade computational pathology and rare cancers detection |
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🤗Hugging Face Paper [Zimmermann et al., 2024] Scaling self-supervised mixed magnification models in pathology |
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🤗Hugging Face GitHub Paper [Filiot et al., 2023] Scaling self-Supervised Learning for histopathology with Masked Image Modeling |
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🤗Hugging Face GitHub Paper [Filiot et al., 2024] A large and public feature extractor for biomarker prediction |
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🤗Hugging Face GitHub [Saillard et al., 2024] Vision foundation model |
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🤗Hugging Face GitHub [Bioptimus, 2025] Vision foundation model |
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🤗Hugging Face GitHub Paper [Filiot et al., 2025] A distilled version of H-optimus-0 |
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🤗Hugging Face GitHub Paper [Nechaev et al., 2024] A family of foundational vision transformers for pathology |
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🤗Hugging Face GitHub Paper [Nechaev et al., 2024] A family of foundational vision transformers for pathology |
Multimodal Models#
🤗Hugging Face GitHub Paper [Huang et al., 2023] Pathology Language-Image Pretraining (PLIP) |
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🤗Hugging Face GitHub Paper [Lu et al., 2024] CONtrastive learning from Captions for Histopathology (CONCH) |
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🤗Hugging Face GitHub Paper [Ding et al., 2024] Multimodal whole slide foundation model for pathology |
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🤗Hugging Face Paper [Shaikovski et al., 2024] A multi-modal generative foundation model for slide-level histopathology, the Prism models encode slide-level embeddings from |
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🤗Hugging Face GitHub Paper [Chen et al., 2025] A visual-omics foundation model to bridge histopathology with spatial transcriptomics |
Segmentation Models#
GitHub Paper [Goldsborough et al., 2024] An embedding-based instance segmentation algorithm optimized for accurate, efficient and portable cell segmentation. |
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GitHub Paper [Tommasino et al., 2024] Nuclei instance segmentation and classification |
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GitHub Paper [Weng et al., 2024] Tissue segmentation model from GrandQC |
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GitHub Paper [Weng et al., 2024] Artifact segmentation model from GrandQC |
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GitHub Paper [Haghighat et al., 2022] Tissue segmentation model from PathProfiler |
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This is a base class for any models from segmentation models pytorch |
Tile Prediction Models#
🤗Hugging Face Tile prediction model on different organs |
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🤗Hugging Face Tile prediction model on different organs |
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🤗Hugging Face Tile prediction model on different organs |
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🤗Hugging Face Tile prediction model on different organs |
Tile Prediction Models (Computer vision features)#
These models are based on OpenCV but provided with a model inferface.
Calculate the brightness of a tile. |
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Calculate the canny edge detection score of a tile. |
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Calculate the contrast of a tile. |
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Calculate the entropy of a tile. |
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Calculate texture features using Gray Level Co-occurrence Matrix (GLCM). |
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Calculate the color saturation of a tile. |
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Calculate the sharpness of a tile. |
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Calculate the sobel of a tile. |
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Calculate the RGB value of a tile. |