lazyslide.metrics.topk

Functions

topk_score(matrix[, k, agg_method])

Get the top k score from a feature x class matrix.

topk_score(matrix, k=5, agg_method='max')

Get the top k score from a feature x class matrix.

Parameters:

matrixnp.ndarray | AnnData

The input matrix. Feature x class.

kint, default: 5

The number of top scores to return.

agg_methodstr, default: “max”

The method to use for aggregation. Can be “max”, “mean”, “median” or “sum”.

Returns:

np.ndarray

The top k scores.