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LazySlide 0.10.1.post7.dev0+c7bd99f documentation - Home LazySlide 0.10.1.post7.dev0+c7bd99f documentation - Home
  • Installation
  • Tutorials
    • Welcome to the world of Whole slide images!
    • Preprocessing a WSI: From raw image to analysis-ready data
    • WSI Visualization in LazySlide
    • Cell segmentation tutorial
    • Feature extraction and spatial analysis
    • Integration with slide-level labels
    • Integration with transcriptomics
    • Zero-shot learning
    • Survival prediction with cancer WSIs
    • Approximate segmentation through tile prediction
    • Virtual Staining: Zero-Cost Multiplexed Imaging from H&E Images
    • Histology tile generation
  • Model Zoo
  • API Reference
    • Preprocessing: pp
      • lazyslide.pp.find_tissues
      • lazyslide.pp.tile_tissues
      • lazyslide.pp.tile_graph
    • Tools: tl
      • lazyslide.tl.feature_extraction
      • lazyslide.tl.feature_aggregation
      • lazyslide.tl.spatial_features
      • lazyslide.tl.tissue_props
      • lazyslide.tl.tile_prediction
      • lazyslide.tl.spatial_domain
      • lazyslide.tl.tile_shaper
      • lazyslide.tl.text_embedding
      • lazyslide.tl.text_image_similarity
      • lazyslide.tl.RNALinker
      • lazyslide.tl.zero_shot_score
      • lazyslide.tl.slide_caption
      • lazyslide.tl.virtual_stain
      • lazyslide.tl.image_generation
    • Plotting: pl
      • lazyslide.pl.tissue
      • lazyslide.pl.tiles
      • lazyslide.pl.annotations
      • lazyslide.pl.WSIViewer
    • Segmentation seg
      • lazyslide.seg.cells
      • lazyslide.seg.cell_types
      • lazyslide.seg.semantic
      • lazyslide.seg.tissue
      • lazyslide.seg.artifact
    • IO io
      • lazyslide.io.load_annotations
      • lazyslide.io.export_annotations
    • Models
      • lazyslide_models.list_models
      • lazyslide_models.vision.CHIEF
      • lazyslide_models.vision.CTransPath
      • lazyslide_models.vision.GPFM
      • lazyslide_models.vision.GenBioPathFM
      • lazyslide_models.vision.GigaPath
      • lazyslide_models.vision.H0Mini
      • lazyslide_models.vision.HOptimus0
      • lazyslide_models.vision.HOptimus1
      • lazyslide_models.vision.HibouB
      • lazyslide_models.vision.HibouL
      • lazyslide_models.vision.LunitDINOPatch8
      • lazyslide_models.vision.LunitDINOPatch16
      • lazyslide_models.vision.LunitResNet50BT
      • lazyslide_models.vision.LunitResNet50MoCoV2
      • lazyslide_models.vision.LunitResNet50SwAV
      • lazyslide_models.vision.Midnight
      • lazyslide_models.vision.OpenMidnight
      • lazyslide_models.vision.PathOrchestra
      • lazyslide_models.vision.Phikon
      • lazyslide_models.vision.PhikonV2
      • lazyslide_models.vision.UNI
      • lazyslide_models.vision.UNI2
      • lazyslide_models.vision.Virchow
      • lazyslide_models.vision.Virchow2
      • lazyslide_models.multimodal.BiomedCLIP
      • lazyslide_models.multimodal.CONCH
      • lazyslide_models.multimodal.MUSK
      • lazyslide_models.multimodal.MedSigLip
      • lazyslide_models.multimodal.OmiCLIP
      • lazyslide_models.multimodal.PLIP
      • lazyslide_models.multimodal.Prism
      • lazyslide_models.multimodal.QuiltNetB16
      • lazyslide_models.multimodal.QuiltNetB16PMB
      • lazyslide_models.multimodal.QuiltNetB32
      • lazyslide_models.multimodal.Titan
      • lazyslide_models.segmentation.Cellpose
      • lazyslide_models.segmentation.GrandQCArtifact
      • lazyslide_models.segmentation.GrandQCTissue
      • lazyslide_models.segmentation.HESTTissueSegmentation
      • lazyslide_models.segmentation.HistoPLUS
      • lazyslide_models.segmentation.Instanseg
      • lazyslide_models.segmentation.NuLite
      • lazyslide_models.segmentation.PathProfilerTissueSegmentation
      • lazyslide_models.segmentation.SAM
      • lazyslide_models.segmentation.SMPBase
      • lazyslide_models.tile_prediction.FocusLiteNN
      • lazyslide_models.tile_prediction.PathProfilerQC
      • lazyslide_models.tile_prediction.SpiderBreast
      • lazyslide_models.tile_prediction.SpiderColorectal
      • lazyslide_models.tile_prediction.SpiderSkin
      • lazyslide_models.tile_prediction.SpiderThorax
      • lazyslide_models.multimodal.Prism
      • lazyslide_models.multimodal.Titan
      • lazyslide_models.vision.CHIEFSlideEncoder
      • lazyslide_models.vision.GigaPathSlideEncoder
      • lazyslide_models.vision.MadeleineSlideEncoder
      • lazyslide_models.vision.Moozy
      • lazyslide_models.tile_prediction.cv_features.Brightness
      • lazyslide_models.tile_prediction.cv_features.Canny
      • lazyslide_models.tile_prediction.cv_features.Contrast
      • lazyslide_models.tile_prediction.cv_features.Entropy
      • lazyslide_models.tile_prediction.cv_features.HaralickTexture
      • lazyslide_models.tile_prediction.cv_features.Saturation
      • lazyslide_models.tile_prediction.cv_features.Sharpness
      • lazyslide_models.tile_prediction.cv_features.Sobel
      • lazyslide_models.tile_prediction.cv_features.SplitRGB
      • lazyslide_models.style_transfer.GigaTIME
      • lazyslide_models.style_transfer.ROSIE
      • lazyslide_models.image_generation.CytoSyn
      • lazyslide_models.base.ImageGenerationModel
      • lazyslide_models.base.ImageModel
      • lazyslide_models.base.ImageTextModel
      • lazyslide_models.base.ModelBase
      • lazyslide_models.base.SegmentationModel
      • lazyslide_models.base.SlideEncoderModel
      • lazyslide_models.base.StyleTransferModel
      • lazyslide_models.base.TilePredictionModel
      • lazyslide_models.base.TimmModel
    • Computer vision utilities
      • lazyslide.cv.Mask
      • lazyslide.cv.BinaryMask
      • lazyslide.cv.MultilabelMask
      • lazyslide.cv.MulticlassMask
      • lazyslide.cv.InstanceMap
      • lazyslide.cv.ProbabilityMap
      • lazyslide.cv.merge_connected_polygons
      • lazyslide.cv.nms
    • Metrics
      • lazyslide.metrics.segmentation.SegmentationStats
      • lazyslide.metrics.segmentation.get_instance_stats
      • lazyslide.metrics.segmentation.get_semantic_stats
      • lazyslide.metrics.segmentation.accuracy
      • lazyslide.metrics.segmentation.precision
      • lazyslide.metrics.segmentation.recall
      • lazyslide.metrics.segmentation.f1_score
      • lazyslide.metrics.segmentation.mean_iou
      • lazyslide.metrics.segmentation.dice
      • lazyslide.metrics.segmentation.sensitivity
      • lazyslide.metrics.segmentation.specificity
      • lazyslide.metrics.segmentation.pq
      • lazyslide.metrics.topk
  • Contributing
    • Setup development environment
    • Submission of new models
    • Release cycle of LazySlide
  • Contributors
  • Glossary
  • References
  • .rst

Contributors

Contents

  • Developers

Contributors#

Rendeiro Lab

LazySlide is developed by Rendeiro Lab at the CeMM Research Center for Molecular Medicine.

_images/cemm-logo.svg

Developers#

  • Yimin Zheng, lead developer.

  • Ernesto Abila, developer.

  • Andre Rendeiro, lab leader, guidance and support.

  • Mr-Milk

    Mr-Milk

  • eabila

    eabila

  • afrendeiro

    afrendeiro

  • SamirMoustafa

    SamirMoustafa

  • Copilot

    Copilot

  • AndreaMariani-AM

    AndreaMariani-AM

  • ariadnavillam

    ariadnavillam

  • fercrcode

    fercrcode

  • lucas-diedrich

    lucas-diedrich

  • sarthakpati

    sarthakpati

  • shubhaminnani

    shubhaminnani

  • simonschindler

    simonschindler

  • didyoutryregularization

    didyoutryregularization

Contents
  • Developers

By LazySlide Contributors

© Copyright 2026, Rendeiro Lab.