Index _ | A | B | C | D | E | F | G | H | I | K | L | M | N | O | P | Q | R | S | T | U | V | W | Y | Z _ __call__() (ImageModel method) A accuracy accuracy() (in module lazyslide.metrics.segmentation) add_contours() (WSIViewer method) add_image() (WSIViewer method) add_polygons() (WSIViewer method) add_scalebar() (WSIViewer method) add_tiles() (WSIViewer method) add_zoom() (WSIViewer method) AnnData annotation annotations annotations() (in module lazyslide.pl) artifact artifact segmentation artifact() (in module lazyslide.seg) associate() (RNALinker method) associated_genes() (RNALinker method) B binary mask BinaryMask (class in lazyslide.cv) BiomedCLIP (class in lazyslide_models.multimodal) Brightness (class in lazyslide_models.tile_prediction.cv_features) C Canny (class in lazyslide_models.tile_prediction.cv_features) cell segmentation cell type segmentation Cellpose (class in lazyslide_models.segmentation) cells() (in module lazyslide.seg) CHIEF (class in lazyslide_models.vision) CHIEFSlideEncoder (class in lazyslide_models.vision) Classpose (class in lazyslide_models.segmentation) ColorDeconvolution (class in lazyslide_models.tile_prediction.cv_features) ColorDeconvolutionMap (class in lazyslide_models.tile_prediction.cv_features) columns (Brightness attribute) (Canny attribute) (ColorDeconvolution attribute) (Contrast attribute) (Entropy attribute) (HaralickTexture attribute) (Saturation attribute) (Sharpness attribute) (Sobel attribute) (SplitRGB attribute) ConceptCLIP (class in lazyslide_models.multimodal) CONCH (class in lazyslide_models.multimodal) confusion matrix contour contours Contrast (class in lazyslide_models.tile_prediction.cv_features) CRISP (class in lazyslide_models.vision) CROWN (class in lazyslide_models.vision) CTransPath (class in lazyslide_models.vision) CytoSyn (class in lazyslide_models.image_generation) D DeepSpotM (class in lazyslide_models.tile_prediction) Delaunay triangulation DensePredictionModel (class in lazyslide_models.base) dice() (in module lazyslide.metrics.segmentation) digital pathology E embedding encode_case() (Moozy method) encode_image() (CHIEF method) (CTransPath method) (OmiCLIP method) encode_slide() (CHIEFSlideEncoder method) (MadeleineSlideEncoder method) (Moozy method) (Prism2 method) encode_text() (OmiCLIP method) Entropy (class in lazyslide_models.tile_prediction.cv_features) estimate_flops() (ModelBase method) estimate_param_size() (ModelBase method) export_annotations() (in module lazyslide.io) F f1_score() (in module lazyslide.metrics.segmentation) feature feature aggregation feature embedding feature extraction feature_aggregation() (in module lazyslide.tl) feature_extraction() (in module lazyslide.tl) feature_prediction() (in module lazyslide.tl) FeaturePredictionModel (class in lazyslide_models.base) features find_tissues() (in module lazyslide.pp) FocusLiteNN (class in lazyslide_models.tile_prediction) foundation model from_polygons() (Mask class method) G GenBioPathFM (class in lazyslide_models.vision) GeoDataFrame geometric features get_image_embedding() (SAM method) get_instance_stats() (in module lazyslide.metrics.segmentation) get_semantic_stats() (in module lazyslide.metrics.segmentation) GigaPath (class in lazyslide_models.vision) GigaPathFlash (class in lazyslide_models.vision) GigaPathFlashSlideEncoder (class in lazyslide_models.vision) GigaPathSlideEncoder (class in lazyslide_models.vision) GigaTIME (class in lazyslide_models.style_transfer) GigaTIMEFlash (class in lazyslide_models.style_transfer) GPFM (class in lazyslide_models.vision) GrandQCArtifact (class in lazyslide_models.segmentation) GrandQCTissue (class in lazyslide_models.segmentation) gtex_artery() (in module lazyslide.datasets) gtex_small_intestine() (in module lazyslide.datasets) H H&E H0Mini (class in lazyslide_models.vision) HaralickTexture (class in lazyslide_models.tile_prediction.cv_features) HESTTissueSegmentation (class in lazyslide_models.segmentation) HibouB (class in lazyslide_models.vision) HibouL (class in lazyslide_models.vision) histopathology HistoPLUS (class in lazyslide_models.segmentation) hole holes HOptimus0 (class in lazyslide_models.vision) HOptimus1 (class in lazyslide_models.vision) Hugging Face Hungarian algorithm I image_generation() (in module lazyslide.tl) image_size (CONCH attribute) ImageGenerationModel (class in lazyslide_models.base) ImageModel (class in lazyslide_models.base) ImageTextModel (class in lazyslide_models.base) instance instance mask instance segmentation InstanceMap (class in lazyslide.cv) Instanseg (class in lazyslide_models.segmentation) intersection over union IoU K KEEP (class in lazyslide_models.multimodal) L Leiden clustering list_models() (in module lazyslide_models) load_annotations() (in module lazyslide.io) lung_carcinoma() (in module lazyslide.datasets) LunitDINOPatch16 (class in lazyslide_models.vision) LunitDINOPatch8 (class in lazyslide_models.vision) LunitDINOPatch8Moozy (class in lazyslide_models.vision) LunitResNet50BT (class in lazyslide_models.vision) LunitResNet50MoCoV2 (class in lazyslide_models.vision) LunitResNet50SwAV (class in lazyslide_models.vision) M MadeleineSlideEncoder (class in lazyslide_models.vision) magnification MarkerMapModel (class in lazyslide_models.base) Mascaret (class in lazyslide_models.vision) mask Mask (class in lazyslide.cv) mean_iou() (in module lazyslide.metrics.segmentation) MedSigLip (class in lazyslide_models.multimodal) merge_connected_polygons() (in module lazyslide.cv) Midnight (class in lazyslide_models.vision) ModelBase (class in lazyslide_models.base) Moozy (class in lazyslide_models.vision) mpp MSTAR (class in lazyslide_models.vision) multi-channel image MulticlassMask (class in lazyslide.cv) MultilabelMask (class in lazyslide.cv) multimodal model multiplexed images MUSK (class in lazyslide_models.multimodal) N neighborhood graph construction NMS nms() (in module lazyslide.cv) non-maximum suppression NuLite (class in lazyslide_models.segmentation) O OmiCLIP (class in lazyslide_models.multimodal) omics data OpenMidnight (class in lazyslide_models.vision) P panoptic quality patch Path2Space (class in lazyslide_models.feature_prediction) PathOrchestra (class in lazyslide_models.vision) PathProfilerQC (class in lazyslide_models.tile_prediction) PathProfilerTissueSegmentation (class in lazyslide_models.segmentation) Phaet (class in lazyslide_models.vision) Phikon (class in lazyslide_models.vision) PhikonV2 (class in lazyslide_models.vision) PLIP (class in lazyslide_models.multimodal) plot_rank() (RNALinker method) plot_score() (RNALinker method) polygon polygons PQ pq() (in module lazyslide.metrics.segmentation) precision precision() (in module lazyslide.metrics.segmentation) predict() (ColorDeconvolutionMap method) (DeepSpotM method) (DensePredictionModel method) (FocusLiteNN method) (GigaTIME method) (GigaTIMEFlash method) (Path2Space method) (PathProfilerQC method) (ROSIE method) (STPath method) (TilePredictionModel method) pretrained model Prism (class in lazyslide_models.multimodal) Prism2 (class in lazyslide_models.multimodal) ProbabilityMap (class in lazyslide.cv) pyramid pyramid structure Q QuiltNetB16 (class in lazyslide_models.multimodal) QuiltNetB16PMB (class in lazyslide_models.multimodal) QuiltNetB32 (class in lazyslide_models.multimodal) R read_ndpa() (in module lazyslide.io) recall recall() (in module lazyslide.metrics.segmentation) respond() (Prism method) (Prism2 method) RNALinker (class in lazyslide.tl) ROSIE (class in lazyslide_models.style_transfer) RudolfV2 (class in lazyslide_models.vision) RudolfV2B (class in lazyslide_models.vision) RudolfV2S (class in lazyslide_models.vision) S SAM (class in lazyslide_models.segmentation) sample() (in module lazyslide.datasets) Saturation (class in lazyslide_models.tile_prediction.cv_features) score() (RNALinker method) segment() (SAM method) segmentation segmentation level segmentation model SegmentationModel (class in lazyslide_models.base) SegmentationStats (class in lazyslide.metrics.segmentation) semantic segmentation semantic() (in module lazyslide.seg) sensitivity() (in module lazyslide.metrics.segmentation) set_viewport() (WSIViewer method) Sharpness (class in lazyslide_models.tile_prediction.cv_features) slide_caption() (in module lazyslide.tl) SlideEncoderModel (class in lazyslide_models.base) SMPBase (class in lazyslide_models.segmentation) Sobel (class in lazyslide_models.tile_prediction.cv_features) spatial feature smoothing spatial tile graph spatial_domain() (in module lazyslide.tl) spatial_features() (in module lazyslide.tl) SpatialData specificity() (in module lazyslide.metrics.segmentation) SpiderBreast (class in lazyslide_models.tile_prediction) SpiderColorectal (class in lazyslide_models.tile_prediction) SpiderSkin (class in lazyslide_models.tile_prediction) SpiderThorax (class in lazyslide_models.tile_prediction) SplitRGB (class in lazyslide_models.tile_prediction.cv_features) STPath (class in lazyslide_models.feature_prediction) T text_embedding() (in module lazyslide.tl) text_image_similarity() (in module lazyslide.tl) tile tile prediction model tile_graph() (in module lazyslide.pp) tile_prediction() (in module lazyslide.tl) tile_shaper() (in module lazyslide.tl) tile_tissues() (in module lazyslide.pp) TilePredictionModel (class in lazyslide_models.base) Tiles tiles tiles() (in module lazyslide.pl) TimmModel (class in lazyslide_models.base) tissue segmentation tissue() (in module lazyslide.pl) (in module lazyslide.seg) tissue_props() (in module lazyslide.tl) Titan (class in lazyslide_models.multimodal) to() (Mask method) to_polygons() (BinaryMask method) (InstanceMap method) (ProbabilityMap method) topk_score() (in module lazyslide.metrics) transform function transform_kws (CROWN attribute) (GigaPath attribute) (GigaPathFlash attribute) (LunitDINOPatch8Moozy attribute) (MSTAR attribute) (TimmModel attribute) (UNI attribute) (UNI2 attribute) (Virchow attribute) U UNI (class in lazyslide_models.vision) UNI2 (class in lazyslide_models.vision) unsupervised spatial domain segmentation V Virchow (class in lazyslide_models.vision) Virchow2 (class in lazyslide_models.vision) virtual_stain() (in module lazyslide.tl) VirtualStainModel (class in lazyslide_models.base) vision model W WSI WSIData WSIViewer (class in lazyslide.pl) Y yes_no_score() (Prism2 method) Z zero-shot classification zero-shot learning zero_shot() (in module lazyslide.seg) zero_shot_score() (in module lazyslide.tl)
